Amazon Sellers Accounting for Estonian Businesses
A complete accounting guide for Amazon FBA sellers — Seller Central reconciliation, FBA fee structure, multi-country P&L allocation, VAT obligations per warehouse country, DAC7 reporting, and the monthly close process.
5 Key Takeaways From This Page
Amazon’s bi-weekly settlement report shows one net number after deducting referral fees, FBA fees, refunds, and promotional credits. Each of those components must be posted separately in your accounts — the net settlement alone is useless for bookkeeping.
Every EU country where Amazon stores your inventory creates a domestic VAT obligation that OSS cannot cover. Germany, France, Poland, Czech Republic, Spain, Italy — each requires its own VAT registration and monthly/quarterly filing.
From 2023, Amazon is legally required to report total sales volume, fees collected, and payment details for every EU seller to the relevant tax authority. Your declared income must match. Discrepancies trigger automatic inquiries.
Amazon’s commingled inventory mixes identical ASINs from different sellers. When a commingled unit sells, you cannot determine whose specific inventory was sold. COGS must be calculated at average cost across all units of that ASIN.
An Estonian seller using PAN-EU FBA has revenue, FBA fees, storage costs, and VAT obligations in up to 7 EU countries simultaneously. A single P&L misrepresents the business. Country-level reporting is essential.
What accounting does an Estonian Amazon FBA seller need? Monthly Seller Central settlement reconciliation (gross sales → all fee types → refunds → promotions → net payout), COGS recognition at product level, FBA fee categorisation into COGS and operating expenses, multi-country inventory tracking, EU VAT compliance (local registrations for each FBA warehouse country, OSS for cross-border sales), DAC7 reporting alignment, and a monthly P&L by marketplace. This page covers each of these workstreams in full.
Section 1 — How Amazon FBA Works Financially
The money flow from customer order to seller payout — and every fee that sits in between
The Amazon FBA Money Flow
| Aspect | FBA (Fulfilled by Amazon) | FBM (Fulfilled by Merchant) |
|---|---|---|
| Fulfilment cost | FBA fee charged by Amazon (COGS) | Your own shipping cost (COGS) |
| Storage cost | Monthly storage fee (OpEx or COGS) | Your warehouse rent (OpEx) |
| Inventory location | Amazon EU warehouse(s) — creates local VAT | Your own location — simpler VAT |
Section 2 — FBA Fee Structure
Every fee type, where it appears in your accounts, and how to categorise each one
| Fee Type | Description | COGS or OpEx? |
|---|---|---|
| Referral fee | % of sales price per item; varies by category | COGS — per unit |
| FBA fulfilment fee | Picking, packing, shipping per unit | COGS — per unit |
| Monthly storage fee | Per cubic metre of inventory stored | OpEx — period cost |
| Professional selling plan | €39/month subscription fee | OpEx — period cost |
FBA creates significantly higher accounting complexity — many fee types, multi-country inventory, local VAT registrations. FBM is closer to standard e-commerce accounting.
Section 3 — Seller Central Settlement Reconciliation
How to read the settlement report, reconcile to your bank, and post correct journal entries
Gross sales (incl. German VAT): €18,640.00
Less fees: €5,672.00
Net transfer to bank: €12,678.00
DR Cash — Amazon Reserve: €18,640.00
CR Revenue — Amazon DE: €15,278.69
CR VAT Payable — German Umsatzsteuer: €2,968.91
DR COGS — Referral/FBA Fees: €5,039.00
CR Cash — Amazon Reserve: €5,819.00
DR Cash — Bank: €12,678.00
CR Cash — Amazon Reserve: €12,678.00
Section 4 — EU FBA: Multi-Country VAT Obligations
Every country where Amazon stores your stock requires its own VAT registration
| Country | Local VAT Registration Required? | VAT Rate | Filing Frequency |
|---|---|---|---|
| 🇩🇪 Germany | Yes — Umsatzsteuer | 19% | Monthly + annual |
| 🇫🇷 France | Yes — TVA | 20% | Monthly CA3 + annual |
| 🇵🇱 Poland | Yes — VAT (PL) | 23% | Monthly JPK_V7M + annual |
| 🇪🇸 Spain | Yes — IVA | 21% | Monthly Modelo 303 + 390 |
| 🇮🇹 Italy | Yes — IVA (IT) | 22% | Monthly LIPE + annual |
Unlike the €10,000 OSS threshold, the obligation to register for local VAT arises the moment Amazon stores your first unit. There is no threshold, no grace period, and no revenue minimum.
Section 5 — Multi-Country P&L for FBA Sellers
How to build a country-level profitability view that separates Amazon EU from the overall business
🇩🇪 Germany: Revenue €14,546 | Gross Profit €4,178 | Margin 28.7%
🇫🇷 France: Revenue €8,120 | Gross Profit €2,337 | Margin 28.8%
🇵🇱 Poland: Revenue €4,085 | Gross Profit €1,177 | Margin 28.8%
Total EU FBA: Revenue €26,751 | Gross Profit €7,692 | Margin 28.8%
For FBA sellers importing goods, product cost should be landed cost — the total cost of getting one unit to the Amazon fulfilment centre, including ex-works price, freight, duties, and inbound shipping.
Section 6 — DAC7: Amazon Reports Your Sales to Tax Authorities
What DAC7 is, what Amazon reports, and why your declared income must match
• Total revenue from sales on Amazon EU marketplaces
• Total fees charged to the seller
• Number of transactions for the year
• Bank account details registered on Seller Central
• Tax identification number
EMTA’s DAC7 data shows gross sales (including VAT). Your declared revenue is net of VAT. EMTA grosses-up your declared net to compare. Any gap — including unexplained returns or promotional credits not properly accounted — will be visible.
Section 7 — Commingled Inventory: The Accounting Challenge
What commingling is, why it complicates COGS, and how to manage it
Batch 1: 200 units @ €4.20 = €840
Batch 2: 300 units @ €4.80 = €1,440
Total: 500 units @ average €4.56 = €2,280
November sales: 180 units × €4.56 = €820.80 COGS
Commingling only applies to Stickerless Inventory (no seller-specific FNSKU). Stickered inventory (each unit has your FNSKU) is tracked separately — cleaner accounting but requires labelling costs.
Section 8 — FBA Reimbursements
When Amazon owes you money — inventory lost, damaged, or miscounted — and how to account for it
| Reimbursement Type | When It Occurs | Accounting Treatment |
|---|---|---|
| Lost inventory | Amazon cannot locate units | Reverse COGS; Other Income on receipt |
| Damaged inventory | Units damaged in warehouse | Reverse COGS; Other Income on receipt |
| Overcharged fees | Incorrect referral/FBA fee | Reduce the relevant fee expense |
Section 9 — Integrating Amazon with Accounting Software
A2X, manual import, and the monthly close process for Amazon FBA sellers
| Feature | A2X Capability | Without A2X |
|---|---|---|
| Settlement ingestion | Automatic via API | Manual export per settlement |
| Multi-marketplace | Handles DE, FR, PL, IT, ES simultaneously | Each marketplace separate manual process |
| Fee categorisation | Auto-maps each fee type to CoA | Manual mapping per entry |
| Monthly time required | 30–60 minutes review | 8–15 hours manual reconciliation |